Long Overdue Update

It's been a long 10 months since my last post, so an update is long overdue. So, what have I been up to all this time?

I've been actively growing our still relatively new UCT Algorithm Circle. We had our 2nd Python course with 75 kids at UCT, and about 15 each in Stellenbosch and Johannesburg. We've put together a solid funding proposal to Google, which if successful will allow us to teach 1,000 kids in Cape Town, Stellenbosch, Johannesburg and Durban as well as attempting to motivate and assist students in these regions to form their own courses.

I've obviously been working towards my MSc in Computer Science. The idea to finish within a year didn't quite work out. Turns out the area I'm working in is ridiculously competitive, so we've been getting harsh paper reviews (not to mention the two immediate rejections without review!). This has resulted in things taking longer than expected, and along with that I've lost a lot of motivation. I'm still touching up the final results and then need to churn through the thesis. I have about 75 pages already, but a lot of it needs to be reworked.

On Wednesday, I leave the country for four months. I'm starting a second internship at Google Zurich, working with my previous mentor this time on the Google Calendar backend. I have a vague idea of what I'll be working on there and I must say it excites me a lot! Once again it's going to involve some stats, which I really enjoy since it often means dealing with insane quantities of data.

Unfortunately I'll be missing the soccer, but hey what would you rather be doing? :P I'll make an effort to head across to Italy to watch some of their games with family there. My roommate so happens to be a Swiss rugby fan, which must be extremely rare. So I'll get to watch the Tri Nations with him.

While I'm up there, I'm going to attempt to finish off as much as my thesis as possible. It will be tricky not having physical meetings with my supervisor, but Skype will have to do. I'm also going to be meeting with my potential PhD supervisors while I'm up there. It's either PhD or work followed by PhD for me -- I haven't quite decided yet.

So that's a very brief update on what's been happening the past 10 months. I plan to be a bit more active here while at Google, to at least keep my friends updated with what I'm doing over there.

Planning for PhD

After the painful experience of seeing my masters supervisor resign a few months ago, things have been turning out rather nicely. A huge advantage of working with my new supervisor is that she has good international collaboration. Last month I met the lead developer (from Illinois) of VMD, one of the visualisation programs I'll be writing my masters project for. This week it got even better!

This week, Dr Robert Best is visiting from Cambridge. It is looking increasingly more likely as time passes that he will be my PhD supervisor. Yes, that is correct...I am this close to getting the amazing opportunity of studying my PhD at Cambridge! The only hurdle at the moment is funding. I've been very slowly releasing news of this, as I first got word of the possibility around the time I started my new masters project a couple months ago. This is entirely thanks to my masters supervisor, Michelle Kuttel, who put me in contact with Dr Best.

Yesterday I met him for the first time, and we discussed potential research topics. The deadline for applications is due very soon, so for the moment we're focussing on a particular topic that looks very promising. Summarising very crudely, it's about taking advantage of both the speed of coarse-grained simulations and the accuracy of fine-grained simulations to produce fast, but accurate simulations of biomolecules. The main question here is how to swap between different representations of the system. Another possibility we have been looking into is furthering his research in reaction coordinates, which he summarises on his website.

By the way, this is the reason I am trying to finish my masters in a year. The year starts in October at Cambridge, and starting when their year begins makes things much simpler.